Structure of 406482-22-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 406482-22-2 |
Formula : | C7H5BrF2O |
M.W : | 223.01 |
SMILES Code : | COC1=C(F)C(F)=C(Br)C=C1 |
MDL No. : | MFCD07368017 |
InChI Key : | VZMFIPVRFWZDPI-UHFFFAOYSA-N |
Pubchem ID : | 21646800 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.14 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 40.55 |
TPSA ? Topological Polar Surface Area: Calculated from |
9.23 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.25 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.79 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.58 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
3.41 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.34 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.07 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.32 |
Solubility | 0.107 mg/ml ; 0.000481 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.64 |
Solubility | 0.511 mg/ml ; 0.00229 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.94 |
Solubility | 0.0254 mg/ml ; 0.000114 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.68 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.66 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With bromine; triethylamine; In dichloromethane; at 0 - 20℃; for 1.33333h; | Step 2) 2.Og 3-Isobutoxy-4,5,6,6a-tetrahydro-3aH-pentalen-l -one was dissolved in 40 ml DCM. 2.47g Br2 was added drop wise and the mixture was stirred at rt for 20 min. The reaction mixture was cooled to O0C and 3.12 g TEA was slowly added. The cooling bath was removed and the mixture was stirred at rt for 1 h. Filtration and concentration gave a crude product which was purified on silica using 2% MeOH in DCM to produce 2.26 g l-Bromo-2,3-difluoro-4-methoxy-benzene. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Step 3 ) n-BuLi (1.1 eq) was added to a solution of 40 mg l-Bromo-2,3-difluoro-4-methoxy-benzene in 5 ml dry ether at -78C under N2. 440 mg (1.61 mmol) 2-Bromo-3-isobutoxy-4,5,6,6a-tetrahydro-3aH- pentalen-1-one dissolved in 5 ml dry ether and cooled to -78C was added drop wise. The mixture was stirred under N2 and the temperature was slowly raised overnight. The reaction was quenched with 10 ml water followed by 10 ml HCl (2N). The aqueous mixture was extracted with ether 3x and the combined organic layers were washed with brine and dried over Na2SO4. Concentration followed by purification on silica using a ether/n-heptane (1 :9-2:8) gradient afforded 390 mg 2-Bromo-3-(2,3-difluoro-4-methoxy- phenyl)-4,5,6,6a-tetrahydro-3aH-pentalen-l-one as a clear oil which solidified after a while. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A 1.6M solution of tert-butyl lithium in pentane (23.4 mL, 37.5 mmol, 2.2 equ) was added dropwise under nitrogen at -78C to a solution of l-bromo-2,3-difluoro-4-methoxybenzene (3.8 g, 17.0 mmol) in anhydrous tetrahydrofuran (40 mL) and the resulting yellow/red solution was stirred for 45 min. at -78 C before the addition of trimethyl borate (5.69 mmol, 51.0 mmol, 3 equ). The resulting pale yellow solution was stirred for 16 h and the reaction was quenched with 3N HC1. The mixture was stirred for 2 h and water was added. The product was extracted with diethyl ether and the combined organic extracts were dried over magnesium sulfate and concentrated in vacuo. The product was triturated with hexane, filtered and dried under suction to give the title compound as an off-white solid (2.53 g, 79% yield).<¾ (DMSO-d6): 8.16 (2H, s (br)), 7.31-7.36 (1H, ddd, J=8.6, 6.6, 2.3), 6.96-7.00 (1H, ddd, J=8.6, 7.3, 1.5), 3.87 (3H, s).Note: The estimated purity of the product as determined by NMR was 80% and the product was used without further purification in the next step. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With potassium carbonate; In N,N-dimethyl-formamide; for 72h; | Methyl iodide (1.56 mL, 25.1 mmol, 1.5 equ) was added dropwise to a suspension of 4-bromo- 2,3-difluorophenol (3.5 g, 16.7 mmol) and potassium carbonate (2.77 g, 20.0 mmol, 1.2 equ) in N,N-dimethylformamide (30 mL) and the mixture was stirred for 3 days. The precipitate was removed by filtration and the filtrate was concentrated to dryness in vacuo. Dichloromethane and water were added and the product was extracted with dichloromethane. The combined organic extracts were dried over magnesium sulfate and concentrated in vacuo to give l-bromo-2,3- difluoro-4-methoxybenzene as a white crystalline solid (3.8 g, quantitative). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
600 mg | With sodium t-butanolate; In 1,4-dioxane; at 100℃;Inert atmosphere; | To a flask containing <strong>[406482-22-2]1-bromo-2,3-difluoro-4-methoxy-benzene</strong> (500 mg, 2.25 mmol) and1,4-dioxa-8-azaspiro[4.5]decane (355 mg, 2.48 mmol) in dioxane (10 mL) was added t-BuONa (432 mg, 4.5 mmol) under N2. After being heated with stirring at 100 C overnight, the resulting reaction mixture was cooled to rt, diluted with H20 (30 mL) and extracted with EA (30 mL) for three times. The combined organic layer was washed with brine (30 mL), dried over anhydrousNa2SO4 and concentrated in vacuo to afford 8-(2,3-difluoro-4-methoxy-phenyl)-1,4-dioxa-8- azaspiro[4.5]decane (600 mg), which was used in the next step without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
42% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In methanol; water; for 12h;Reflux; Inert atmosphere; | 1,4-phenylene diboronic acid (1.0 g, 6.03 mmol)1,2-Dimethoxyethanol (100 mL)And methanol (10 mL) was addedAfter dissolution,4-Bromoanisole (1.24 g, 6.64 mmol) and <strong>[406482-22-2]2,3-difluoro-4-bromoanisole</strong> (1.48 g, 6.64 mmol) were added dropwise to the mixed solution,2 M aqueous potassium carbonate solution (20 mL) was added and degassed.To the mixed solution, palladium tetrakis (triphenylphosphine)(349 mg, 0.30 mmol), and the mixture was refluxed under nitrogen atmosphere for 12 hours.An excessive amount of distilled water was added to the reaction solution to terminate the reaction,After extraction with dichloromethane, the solvent was concentrated under reduced pressure,The residue was purified by column chromatography to give the desired compound (827 mg, 42%) as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
4.4 g | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In methanol; Dimethyl ether; water; for 11h;Reflux; | 2-thiophene boronic acid pinacol ester(5.0 g, 23.8 mmol) was dissolved in dimethyl ether (150 ml) and MeOH (70 ml) and degassed for 30 minutes. To the mixed solution was added a potassium carbonate aqueous solution (K2CO3, 2M, 20 ml) and <strong>[406482-22-2]4-bromo-2,3-difluoroanisole</strong> (6.4 g, 28.6 mmol). After degassing again for 30 minutes, tetrakis (triphenylphosphine) palladium(Pd (PPh3) 4, 2.8 g, 2.4 mmol) was added and the mixture was degassed for 1 hour, then the temperature was raised, and the mixture was refluxed with stirring. Next, the reaction mixture was poured into excess water to complete the reaction, followed by extraction with dichloromethane, drying, and passing through a silica gel column to obtain a colorless liquid crude product (4.4 g). |
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