Structure of 442127-50-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 442127-50-6 |
Formula : | C5H4BrClN2 |
M.W : | 207.46 |
SMILES Code : | NC1=NC(Cl)=CC=C1Br |
MDL No. : | MFCD13189343 |
InChI Key : | OSFDXYVWIQEZHA-UHFFFAOYSA-N |
Pubchem ID : | 52987943 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 41.35 |
TPSA ? Topological Polar Surface Area: Calculated from |
38.91 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.72 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.16 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.09 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.6 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.03 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.92 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.98 |
Solubility | 0.217 mg/ml ; 0.00105 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.61 |
Solubility | 0.51 mg/ml ; 0.00246 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.14 |
Solubility | 0.15 mg/ml ; 0.000724 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.03 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.83 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | In ethanol; for 1.25h;Heating / reflux; | A.2 N'-(3-Bromo-6-chloro-pyridin-2-yl)-N,N-dimethyl-formamidine '[0329] A mixture of <strong>[442127-50-6]3-bromo-6-chloro-pyridin-2-ylamine</strong> (1.43 g, 6.89 mmol) and N5N- dimethylformamide dimethyl acetal (1.14 mL, 8.62 mmol), dissolved in ethanol (35 mL), is refluxed for 75 minutes. The reaction mixture is evaporated in vacuo affording the title compound (1.89 g, 100 %). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
25.5% | With bromine; In chloroform; at 0 - 20℃; for 16.0h; | To a solution of 2-amino-6-chloropyridine (15g, 116mmol) in chloroform (600ml) was added a solution of bromine (4.2g, 965mmol) in chloroform (50ml) at 0C and the reaction mixture wasstirred at room temperature for 16h. After completion of reaction, the reaction was quenched over ice cold water; extracted to DCM and concentrated to obtain the crude compound. The crude compound was purified by silica gel column chromatography using 10% ethyl acetate in hexane as eluent to afford the title compound (6.2g, 25.5%). LCMS: m/z = 209.0 (M+1)+. |
17% | With bromine; In chloroform; | A.1 3-Bromo-6-chloro-pyridin-2-ylamine[0328] 6-Chloro-pyridin-2-ylamine (5g, 38.89 mmol) is dissolved in chloroform (250 mL) and a solution of bromine (1.33 mL, 26 mmol) in chloroform (50 mL) is slowly added over a one hour period. During the addition a precipitate (hydrobromide salt of the starting material) forms. After stirring overnight the reaction mixture is filtered, the filtrate is evaporated and the residue is partitioned between ethyl acetate and 1 M sodium carbonate solution. The organic phase is separated, evaporated and the solid residue purified by flash chromatography (silica gel, 15 % ethyl acetate in petroleum ether) affording the title compound (1.44 g, 17 %) as a solid. The material is carried through the next three reaction steps. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In 1,4-dioxane; water; at 80℃; for 16.0h;Inert atmosphere; | To a solution of 3-bromo-6- chloropyridin-2-amine (1 g, 4.82 mmol) in 1,4-dioxane (40 mL) and water (4 mL) were added pyridin-3-ylboronic acid (0.65 g, 5.30 mmol), potassium carbonate (1.33 g, 9.64 mmol) and tetrakis(triphenylphosphine)palladium(0) (0.56 g, 0.48 mmol). The resulting solution was stirred for 16 hours at 80 C under nitrogen atmosphere. After cooling down to ambient temperature, the resulting mixture was diluted with water (100 mL) and extracted with ethyl acetate (3 x 100 mL). The combined organic layers was washed with brine (30 mL) and dried over anhydrous sodium sulfate. After filtration, the filtrate was concentrated under reduced pressure and the residue was purified by silica gel column chromatography, eluted with 1-2% methanol in dichloromethane to afford 6-chloro-3,3'-bipyridin-2-amine as a light yellow solid: MS (ESI, m/z): 206.1 [M + 1]+; 1H NMR (400 MHz, OMSO-d6) delta 8.66 (s, 1H), 8.57 (dd, J= 2.0 Hz, 4.4 Hz, 1H), 7.84-7.82 (m, 1H), 7.48-7.45 (m, 1H), 7.38 (d, J= 7.6 Hz, 1H), 6.69 (d, J= 11.6 Hz, 1H), 6.28 (br s, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69% | In N,N-dimethyl-formamide; at 150℃; for 4.0h; | A solution of <strong>[442127-50-6]3-bromo-6-chloropyridin-2-amine</strong> (42g, 202mmol) and potassium ethyl xanthate (58.15g, 363mmol) in DMF (200mL) was heated at 150C for 4h. The reaction mixture was cooled to 0C, diluted with ice water, acidified with cone. HCl. The solid obtained was filtered and dried under vacuum to afford the title compound (40gm, 69%). LCMS: m/z =203.0 (M+1) + |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
17% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium phosphate; In 1,4-dioxane; water; at 80℃; for 4.0h; | Step 1: Preparation of l-(4-(2-amino-6-chloropyridin-3-yl)phenyl)pyrrolidin-2-one. [0815] l-(4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl)pyrrolidin-2-one (900 mg, 3.13 mmol), <strong>[442127-50-6]3-bromo-6-chloropyridin-2-amine</strong> (500 mg, 2.41 mmol), K3PO4 (1.53 g, 7.23 mmol) and Pd(dppf)Ch (70 mg, 0.096 mmol) were taken up in dioxane (15 mL) and H2O (3 mL). The resulting mixture was stirred at 80 C for 4 hours. A black solution was formed. LCMS showed the purity of the desired product is 48% (Rt = 0.715 min; MS Calcd: 287.1; MS Found: 287.8 [M+H]+). TLC showed the starting material was remained. The mixture was concentrated under reduced pressure. The residue was purified by Combi Flash (90% EA in PE) to give impure product (240 mg) as a yellow solid, then triturated with EA: PE = 1: 1 (10 mL) for 1 hour to give 1-(4-(2-amino-6-chloropyri din-3 -yl)phenyl)pyrrolidin-2-one (121 mg, yield: 17%) as a light yellow solid. NMR (400 MHz, CDCh) d 2.15-2.23 (2H, m), 2.64 (2H, t, J= 8.0 Hz), 3.91 (2H, t, J =7.2 Hz), 4.58 (2H, brs), 6.48 (2H, d, J= 8.0 Hz), 7.42 (2H, dd, J= 8.8, 2.0 Hz), 7.67 (2H, d, J= 8.8 Hz). |